miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse :: Contigs




EST name EST sequence
gi|86110879|gb|BB922088.1|BB922088 CTTTAGTCTTTCTTCTTTGTCACATGCCAAAACTTCTATCAAGAAAACTACATTGAGACCCTTTGCATCTCTTAACTCTT
CTTCTTCCTCTTCATCTTCTACTTTCCCTTCTCTTATTCAAGACAAACCTGTTTTTGCTTCCTCTTCTCCTTTCATCACT
CCAATTTTGAGAGAAGAAATGGGAAAGGGTTATGAAGAAGCAATTCAAGAACTCGAGAAATTGTTGAGGGAGAAGGCCGA
CTTGAAAGCCACAGCAGCTGAAAAGGTTGAACAAATAACAGCTCAACTTGGATCAGTTACAGCTCAAGCTGCAACACCAT
CATCATCTGATGGTATTCCAACATCTGAAGCCTCAGAGAGGATCAAAACTGGTTTCATTCACTTCAAGAAAGAGAAATAT
GACAAGAATCCAGCTTTGTATGGTGAACTTGCCAAAGGCCAAAGCCCCCCGTATATGGTGTTTGCATGCTCAGACTCAAG
AGTCTGCCCATCTCATGTGCTAGATTTCCAGCCAGGAGAAGCTTTTGTAGTCAGAAATGTTGCTAACTTGGTTCCACCAT
ATGACCAGGCAAAATATGCTGGA




Most similar to sp|P17067|CAHC_PEA

>BLASTX 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>sp|P17067|CAHC_PEA Carbonic anhydrase, chloroplastic OS=Pisum
           sativum PE=1 SV=1
          Length = 328

 Score =  317 bits (812), Expect = 3e-86
 Identities = 165/196 (84%), Positives = 173/196 (88%), Gaps = 2/196 (1%)
 Frame = +2

Query: 2   FSLSSLSHAKTSIKKTTLRPF--ASLNXXXXXXXXTFPSLIQDKPVFASSSPFITPILRE 175
           FSLSSLS AKTS K+TTLRPF  ASLN        TFPSLIQDKPVFASSSP ITP+LRE
Sbjct: 9   FSLSSLSPAKTSTKRTTLRPFVSASLNTSSSSSSSTFPSLIQDKPVFASSSPIITPVLRE 68

Query: 176 EMGKGYEEAIQELEKLLREKADLKATAAEKVEQITAQLGSVTAQAATPSSSDGIPTSEAS 355
           EMGKGY+EAI+EL+KLLREK +LKATAAEKVEQITAQLG       T SSSDGIP SEAS
Sbjct: 69  EMGKGYDEAIEELQKLLREKTELKATAAEKVEQITAQLG-------TTSSSDGIPKSEAS 121

Query: 356 ERIKTGFIHFKKEKYDKNPALYGELAKGQSPPYMVFACSDSRVCPSHVLDFQPGEAFVVR 535
           ERIKTGF+HFKKEKYDKNPALYGELAKGQSPP+MVFACSDSRVCPSHVLDFQPGEAFVVR
Sbjct: 122 ERIKTGFLHFKKEKYDKNPALYGELAKGQSPPFMVFACSDSRVCPSHVLDFQPGEAFVVR 181

Query: 536 NVANLVPPYDQAKYAG 583
           NVANLVPPYDQAKYAG
Sbjct: 182 NVANLVPPYDQAKYAG 197